software:arcgis:farber

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software:arcgis:farber [2017-10-23 16:18] – created sraskarsoftware:arcgis:farber [2021-04-27 16:21] (current) – external edit 127.0.0.1
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 +====== Using ArcGIS on Farber ======
 +
 +===== Batch job =====
 +
 +In order to use the [[:software:arcgis:arcgis#install-arcgis-shell|ArcGIS shell]] it needs to be installed in your account.  For account ''traine'' in workgroup ''it_css'', the ArcGIS shell was installed in ''$WORKDIR/traine/arcgis-10.1-shell''. 
 +A python script is used to execute the GIS tasks like the ''arc-test.py'' below. This example refers to the full path of the input file as ''/lustre/work/it_css/ArcGIS'' and the output file as ''/lustre/work/it_css/traine/ArcGIS''.
 +
 +<code - arc-test.py>
 +# This example code produces a 100 Meter buffer of a point located in the center of Newark, DE
 +import arcpy
 +arcpy.Buffer_analysis("z:\\lustre\\work\\it_css\\ArcGIS\\nwkcntr.shp","z:\\lustre\\work\\it_css\\traine\\ArcGIS\\nwkcntr_Buffer","100 Meters","FULL","ROUND","NONE","#")
 +</code>
 +
 +You will also need a queue submission file to run your GIS tasks which will be based on the ''serial.qs'' template in ''/opt/shared/templates/gridengine''. The example below is a modified version called ''arc-submit.qs'' for the account ''traine'' in workgroup ''it_css'' using the installed ArcGIS shell in ''/archive/it_css/traine/arcgis-10.1-shell''.
 +
 +<code - arc-submit.qs>
 +# Setup the environment; add vpkg_require commands after this
 +# line:
 +
 +# Now append all of your shell commands necessary to run your program
 +# after this line:
 +
 +$WORKDIR/traine/arcgis-10.1-shell arc-test.py
 +</code>
 +
 +
 +Create a directory ''<//ArcGIS_projects//>'' to store your ''.py'' and ''.qs'' file.  This is also the directory you most likely will want to reference for your input and output files. For account ''traine'' in workgroup ''it_css'' we will use ''$WORKDIR/traine/ArcGIS''. Now we can submit our batch run by using
 +
 +<code bash>
 +[traine@farber ArcGIS]$ workgroup -g it_css
 +[(it_css:traine)@farber ArcGIS]$ qsub arc-submit.qs
 +</code>
 +
 +===== Interactive job =====
 +
 +All interactive jobs should be run on a compute node by setting your ''workgroup'' and using ''qlogin''. For account ''traine'' in workgroup ''it_css'', the ArcGIS shell was installed in ''$WORKDIR/traine/arcgis-10.1-shell''. The same python script, [[http://docs.hpc.udel.edu/_export/code/clusters/mills/arcgis?codeblock=1|arc-test.py]], used for the [[:software:arcgis:farber#batch-job|batch job]] can be used for an interactive job.
 +
 +Although there is no GUI with the ArcGIS shell, if it detects that your SSH connection is configured to enable X11-forwarding you will get an [[:software:arcgis:arcgis#troubleshooting | error]] unless you run an X-Windows server (e.g. Xming) or ''unset DISPLAY'' before running the ArcGIS shell.
 +==== Running X-Windows and DISPLAY set properly ====
 +
 +The example below shows an ArcGIS interactive job with an X-Windows server running. 
 +<code bash>
 +[traine@farber ArcGIS]$ workgroup -g it_css
 +[(it_css:traine)@farber ArcGIS]$ qlogin
 +Your job 357451 ("QLOGIN") has been submitted
 +waiting for interactive job to be scheduled ...
 +Your interactive job 357451 has been successfully scheduled.
 +Establishing /opt/shared/OpenGridScheduler/local/qlogin_ssh session to host n016 ...
 +[traine@n016 ArcGIS]$ $WORKDIR/traine/arcgis-10.1-shell
 +Adding package `x11/RHEL6.1` to your environment
 +Python 2.7.2 (default, Jun 12 2011, 14:24:46) [MSC v.1500 64 bit (AMD64)] on win32
 +Type "help", "copyright", "credits" or "license" for more information.
 +>>> execfile("arc-test.py")
 +>>> quit()
 +[traine@n016 ArcGIS]$
 +</code>
 +
 +
 +===== ArcGIS shell installation example =====
 +
 +The following example shows the install steps of the ArcGIS shell on the Farber cluster for account ''traine'' in the install directory ''$WORKDIR/traine''. Remember each user must install the ArcGIS shell for their own account. Once the install is complete, the ArcGIS shell (''$WORKDIR/traine/arcgis-10.1-shell'') will only work for the account ''traine'' on Farber.
 +
 +<code bash>
 +[traine@farber ~]$ workgroup -g it_css
 +[(it_css:traine)@farber ~]$ qlogin
 +Your job 357310 ("QLOGIN") has been submitted
 +waiting for interactive job to be scheduled ...
 +Your interactive job 357310 has been successfully scheduled.
 +Establishing /opt/shared/univa/local/qlogin_ssh session to host n038                               ...
 +[traine@n038 ~]$  /opt/shared/arcgis/bin/install-arcgis-10.1 $WORKDIR/traine
 +Adding package `openjdk/1.7.0` to your environment
 +[ArcGIS 10.1 for Server Installation Details]
 +UI Mode..................silent
 +Agreed to Esri License...yes
 +Authorization File......./opt/shared/arcgis/data/10.1/ArcGISforServerAdvancedEnterprise_server_194954.prvc
 +Installation Directory.../home/work/it_css/traine/arcgis/server
 +
 +Starting installation of ArcGIS 10.1 for Server...
 +...ArcGIS 10.1 for Server installation is complete.
 +
 +You will be able to access ArcGIS Server Manager by navigating to http://n038:6080/arcgis/manager.
 +
 +Killing 4 process(es) started by the installer...
 +
 +Patching the init_Xvfb.sh script...
 +
 +Adding ArcGIS shell startup script.  You can run the Python shell with the command
 +
 +  /home/work/it_css/traine/arcgis-10.1-shell
 +
 +[traine@n038 ~]$  exit
 +exit
 +Connection to n038 closed.
 +/opt/shared/univa/local/qlogin_ssh exited with exit code 0
 +[(it_css:traine)@farber ~]$
 +</code>
 +
 +===== Update ArcGIS shell License example =====
 +
 +The following example shows updating the ArcGIS shell license on the Farber cluster for account ''traine'' in the install directory ''$WORKDIR/traine''.
 +
 +<code bash>
 +[(it_css:traine)@farber ~]$ $WORKDIR/traine/arcgis/server/tools/authorizeSoftware /opt/shared/arcgis/data/10.1/ArcGISforServerAdvancedEnterprise_server.prvc
 +--------------------------------------------------------------------------
 +Starting the ArcGIS Software Authorization Wizard
 +
 +Run this script with --help for additional information.
 +--------------------------------------------------------------------------
 +Product          Ver   ECP#           Expires
 +-------------------------------------------------
 +arcsdeserver     101   ecp202688495   29-aug-2015
 +svrenterprise    101   ecp202688495   29-aug-2015
 +arcgisserver     101   ecp202688495   29-aug-2015
 +schematicssvr    101   ecp202688495   29-aug-2015
 +capacitysvr_4    101   ecp202688495   29-aug-2015
 +svradvanced      101   ecp202688495   29-aug-2015
 +3dserver         101   ecp354306806   29-aug-2015
 +spatialserver    101   ecp334244774   29-aug-2015
 +networkserver    101   ecp024156793   29-aug-2015
 +imageextserver   101   ecp375117235   29-aug-2015
 +interopserver    101   ecp633064094   29-aug-2015
 +geostatserver    101   ecp302546023   29-aug-2015
 +datareviewersvr  101   ecp096386809   29-aug-2015
 +geoeventsvr      101   ecp153720790   29-aug-2015
 +arcsdeserver     101   ecp202688495   29-aug-2015
 +svrenterprise    101   ecp202688495   29-aug-2015
 +arcgisserver     101   ecp202688495   29-aug-2015
 +schematicssvr    101   ecp202688495   29-aug-2015
 +capacitysvr_4    101   ecp202688495   29-aug-2015
 +svradvanced      101   ecp202688495   29-aug-2015
 +3dserver         101   ecp354306806   29-aug-2015
 +spatialserver    101   ecp334244774   29-aug-2015
 +networkserver    101   ecp024156793   29-aug-2015
 +imageextserver   101   ecp375117235   29-aug-2015
 +interopserver    101   ecp633064094   29-aug-2015
 +geostatserver    101   ecp302546023   29-aug-2015
 +datareviewersvr  101   ecp096386809   29-aug-2015
 +geoeventsvr      101   ecp153720790   29-aug-2015
 +arcsdeserver     101   ecp056057463   29-aug-2016
 +svrenterprise    101   ecp056057463   29-aug-2016
 +arcgisserver     101   ecp056057463   29-aug-2016
 +schematicssvr    101   ecp056057463   29-aug-2016
 +capacitysvr_4    101   ecp056057463   29-aug-2016
 +svradvanced      101   ecp056057463   29-aug-2016
 +3dserver         101   ecp014449115   29-aug-2016
 +spatialserver    101   ecp194669772   29-aug-2016
 +networkserver    101   ecp138127809   29-aug-2016
 +imageextserver   101   ecp187875580   29-aug-2016
 +interopserver    101   ecp702896384   29-aug-2016
 +jtxserver        101   ecp326582940   29-aug-2016
 +geostatserver    101   ecp060377653   29-aug-2016
 +businesssvr      101   ecp262072383   29-aug-2016
 +geoportalextsvr  101   ecp031201190   29-aug-2016
 +highwayssvr      101   ecp298838744   29-aug-2016
 +</code>
 +